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Registry signatures

sig_matrix_cti_granularity_1()

Load the cross tissue immune signature matrix (1st granualrity level).

Source code in src/pydeconv/signature_matrix/registry.py 
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def sig_matrix_cti_granularity_1():
    """Load the cross tissue immune signature matrix (1st granualrity level)."""
    path = download_file_to_cache(
        repo_url=REPO_URL, origin=ORIGIN, relative_path="sig_matrix_Cross_Tissue_Immune_granularity_1.csv"
    )
    return SignatureMatrix.load(path, index_col=0)

sig_matrix_cti_granularity_2()

Load the cross tissue immune signature matrix (2nd granualrity level).

Source code in src/pydeconv/signature_matrix/registry.py 
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def sig_matrix_cti_granularity_2():
    """Load the cross tissue immune signature matrix (2nd granualrity level)."""
    path = download_file_to_cache(
        repo_url=REPO_URL, origin=ORIGIN, relative_path="sig_matrix_Cross_Tissue_Immune_granularity_2.csv"
    )
    return SignatureMatrix.load(path, index_col=0)

sig_matrix_laughney_lung_cancer()

Load the Laugney lung cancer signature matrix.

Source code in src/pydeconv/signature_matrix/registry.py 
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def sig_matrix_laughney_lung_cancer():
    """Load the Laugney lung cancer signature matrix."""
    path = download_file_to_cache(repo_url=REPO_URL, origin=ORIGIN, relative_path="sig_matrix_laughney_lung_cancer.csv")
    return SignatureMatrix.load(path, index_col=0)