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owkin/fedpydeseq2
FedPyDESeq2
owkin/fedpydeseq2
General
General
Installation
Installation for delevopers
Contributing
Logging
References
Tutorials
Tutorials
FedPyDESeq2 demo on the TCGA-LUAD dataset.
API
API
Running an experiment
Core
Core
Build design matrix
Compute size factors
Estimating LFCs and dispersions
Computing the Cooks distance
Replacing outliers
Replace refitted values
Computing statistics and p-values
Saving results
Strategy
Utils
Utils
Core
Substra
Federated algorithms
Federated algorithms
Compute trimmed mean
Compute dispersions with grid search
Federated IRLS
Federated ProxQuasiNewton
The
fedpydeseq2
main module