Installation

1 - Create a conda environment with python 3.10+

conda create -n fedpydeseq2 python=3.10 # or a higher python version
conda activate fedpydeseq2

2 - Install poetry

Run

conda install pip
pip install poetry==1.8.2

and test the installation with poetry --version.

3 - Install the package and its dependencies using poetry

cd to the root of the repository and run

poetry install

If you want to install to contribute, please run

poetry install --with linting,testing

If you wish to manually create the documentation, please run

poetry install --with docs

If you want to run the paper experiments, please visit https://github.com/owkin/fedpydeseq2-paper-experiments.